PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 882294
Common NameARALYDRAFT_681738
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 423aa    MW: 46384.7 Da    PI: 9.4636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
882294genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05181203223
              EETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
               Cp Cg++F+  ++L+ H+ + H
   882294 181 ACPQCGEVFPKLETLELHQAVrH 203
              6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280180203IPR007087Zinc finger, C2H2
PROSITE profilePS501578.58180208IPR007087Zinc finger, C2H2
SuperFamilySSF563998.25E-23205418No hitNo description
Gene3DG3DSA:3.90.228.103.7E-14207419IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAPLPFIPEQ THSQTRLSSD TKKKNRNKKT SQPPPQTQTL KQKEKKKTVP TSSSSSSWSQ  60
IKNLLSCKQI EGPRVHEPSK ITSSSCGTSL CRFSDVVYGN ARVIHRSDHS PESSNLGQDA  120
RLLTRKPVTR GSSSSVRSNG CGAYTSYSTS KAMHFRNLSG CYECHMIVDP SRYPIAPRIC  180
ACPQCGEVFP KLETLELHQA VRHAVSELGP EDSGRNIVEI IFKSSWLRKD SPIYKIERIL  240
KVHNTQRTIQ RFEDCRDAVK SHAHGSTRKE PRSAADGNEL LCFHCTTVSC SLGSCGSTSI  300
CSAIPGCRVC TIIRHGFHAK TVRVGNGEGK EEIKGVRTTA SSGRAHDALR CFDQRRAMLV  360
CRVIAGRVRR VQSDVPEDES GSGSYDSVAG AAGVYTSLDD LVVYNPKAIL PCFVVIYKVS  420
EP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894076.10.0predicted protein
TrEMBLD7KBX80.0D7KBX8_ARALL; Predicted protein
STRINGAl_scaffold_0001_40610.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-157C2H2-like zinc finger protein